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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G131000.2 | ||||||||
Common Name | B456_001G131000, LOC105793540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 454aa MW: 50210.2 Da PI: 9.687 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 8 | 28 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Gorai.001G131000.2 8 CEICNKGFQRDQNLQLHRRGH 28 *******************88 PP | |||||||
2 | zf-C2H2 | 12 | 0.00063 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Gorai.001G131000.2 82 WKCEKCSKKYAVQSDWKAHSKIC 104 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.89E-7 | 5 | 28 | No hit | No description |
SMART | SM00355 | 0.11 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 47 | 77 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 70 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.89E-7 | 77 | 102 | No hit | No description |
SMART | SM00355 | 140 | 82 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK EVRKKVYICP EKTCVHHDPS 60 RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYR CDCGTLFSRK 120 DSFITHRAFC DALAEESARF TSVSTNVNPA AASFRNDLIH GANNNGMHQF SSGFRPEFGG 180 LELVDNLNSN GQKPRLQLWL DEANSQVNPF GIPSNANAFL APKSTSFPDL GMAPMNMFGS 240 LTTQWLGKYP EDASFAGANL NMSALRHGPK QEEENKGDLS ESITSLYSNN SLQQQQQQNY 300 THMSATALLQ KAAQMGSTRN NPAINNSGFG LMSSNTYDQN KNHVYKLFKQ ANDQSDNINE 360 LVSSLSSNQA TIVKDGSALD DLKSSSFVRN ASSKGKQGGQ AVVLASKLNN TNSNEVELSL 420 TRDFLGVGGE SSRPLLQQGL AKFASMGSIH PWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 44 | KLKQRTNKEVRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527185 | 1e-121 | HQ527185.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GHRJ2 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012477895.1 | 0.0 | PREDICTED: protein indeterminate-domain 9-like | ||||
Swissprot | Q944L3 | 1e-102 | IDD9_ARATH; Protein indeterminate-domain 9 | ||||
TrEMBL | A0A0D2PY83 | 0.0 | A0A0D2PY83_G | ||||
STRING | VIT_06s0004g03070.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-85 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G131000.2 |
Entrez Gene | 105793540 |
Publications ? help Back to Top | |||
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